Extended Hückel MO calculations of the conformation of several amino acids

The conformation of the amino acid residues, glycine, alanine, proline, and phenylalanine have been predicted from molecular orbital calculations of appropriate model compounds. Using the current main chain rotation convention (, ) the principle conformations were found to be glycine (0, 0), alanine (240, 240), proline (120, 330) and phenylalanine (30, 330). Several secondary conformations were also found for glycine. A comparison of the predicted conformations is in good agreement with experimental data on comparable residues or model compounds.Supported by National Institutes of Health Grants No. FR 5409-07 and GM 16312-01.Recipient of a Public Health Service Research Career Development Award AM 1159-01.     

Rapid synthesis of α-ketoamides using microwave irradiation-simultaneous cooling method

Microwave-assisted acyl chloride-isonitrile condensation and CaCO₃-mediated hydrolysis constitute a one-pot, 2-minute process to prepare α-ketoamides.     

A polymorphic pocket at the P10 position contributes to peptide binding specificity in class II MHC proteins

Peptides bind to class II major histocompatibility complex (MHC) proteins in an extended conformation. Pockets in the peptide binding site spaced to accommodate peptide side chains at the P1, P4, P6, and P9 positions have been previously characterized and help to explain the obtained peptide binding specificity. However, two peptides differing only at P10 have significantly different binding affinities for HLA-DR1. The structure of HLA-DR1 in complex with the tighter binding peptide shows that the peptide binds in the usual polyproline type II conformation, but with the P10 residue accommodated in a shallow pocket at the end of the binding groove. HLA-DR1 variants with polymorphic residues at these positions were produced and found to exhibit different side chain specificity at the P10 position. These results define a new specificity position in HLA-DR proteins.     

Biomimetic cycloaddition approach to tropolone natural products via a tropolone ortho-quinone methide

[reaction: see text] A study toward a possible biomimetic hetero Diels-Alder reaction is reported between humulene and a novel tropolone ortho-quinone methide. A suitable tropolone ortho-quinone methide precursor has been prepared from 3-methyl-2-furoate. Heating the ortho-quinone methide precursor gave a tropolone ortho-quinone methide, which in the presence of humulene underwent a hetero Diels-Alder reaction to give a deoxy analogue of epolone B.     

Gene expression analysis for high throughput screening applications

To meet growing needs for high throughput gene expression profiling, we established a new automated high throughput TaqMan RT-PCR method for quantitative mRNA expression analysis. In this method, the Allegro( trade mark ) (Zymark) system conducts all sample tracking and liquid handling steps, and ABI PRISM 7900 HT (Applied Biosystems) is used to conduct real-time determination of the C(t) value when amplification of PCR products is first detected and accumulation of inhibitory PCR products is unlikely to occur. The ABI PRISM 7900 HT Sequence Detection System features a real-time PCR instrument with 384-well-plate compatibility and robotic loading, and continuous wavelength detection, which enables the use of multiple fluorophores in a single reaction. The Allegro System offers an assembly line approach with a modular design that allows reconfiguration of the components to accommodate variations in the assay flow. In the present study, we have established and validated a new automated High Throughput (HT) TaqMan RT-PCR- based method for quantitative mRNA expression analysis. The data demonstrate that HT-Taqman PCR is a powerful tool that can be used for measuring low concentrations of mRNA, and is highly accurate, reproducible, and amenable to high throughput analysis. Results suggest that HT-TaqMan is a reliable method for the quantification of low-expression genes and a powerful tool with HT capability for target identification/validation, structure-activity relationship (SAR) study, compound selection for efficacy studies, and biomarker identification in drug discovery and development.     

Ion spray-tandem mass spectrometry of supramolecular coordination complexes

Double-helical [M₂L₂] ⁿ⁺, triple-helical [M₂L₃] ⁿ⁺, and toroidal [M₃L₃] ⁿ⁺ (M = Cu, Co, Fe, Ni, La, Eu, Gd, Tb, or Lu) supramolecular complexes have been fully characterized by ion spray mass spectrometry (IS-MS). The IS-MS spectra from pure acetonitrile solutions reflect the nature of the cations present in solution with conservation of the charge state and allow an efficient qualitative speciation of the compounds. The mass spectrometry results can be correlated with other powerful techniques (nuclear magnetic resonance and electronic spectroscopy) for the characterization of supramolecular complexes in solution, Structural information is obtained by collision-induced dissociation, which strongly depends on the metal ions used in the supramolecular complexes and on the various connectivities and topologies of the ligands. When the ligand contains 3,5dimethoxybenzyl groups bound to the benzimidazole rings, the partial fragmentation of the complexes is associated with a decrease of the total charge of the complexes and the appearance of the characteristic fragment at m/z 151 that corresponds to the 3,5-dimethoxybenzyl cation. A detailed analysis of the fragmentation pathways of these supramolecular complexes suggests that the metal-nitrogen coordination bonds are very strong in the gas phase.     

New rhenium-tin cluster adds palladium phosphine groups across Re-Sn bonds

The new rhenium-tin complex Re2(CO)8(mu-SnPh2)2, 1 was obtained in 52% yield from the reaction of Re2(CO)8(mu-H)[mu-C(H)C(H)Bu] with Ph3SnH. Compound 1 contains two SnPh2 groups bridging a long Re-Re single bond, Re-Re = 3.1971(4) A [3.1902(4) A], Re-Sn = 2.7429(4) A [2.7445(4) A], and 2.7675(4) [2.7682(5) A]. A bis-Pd(PBut3) adduct of 1, Pd2Re2(CO)8(mu-SnPh2)2(PBut3)2, 2 was obtained from the reaction of 1 with Pd(PBut3)2. Compound 2 contains Pd(PBut3) groups bridging two of its four Re-Sn bonds. The Re-Re bond and the unbridged Re-Sn bonds in 2 are significantly longer than those in 1, 3.245(1) A and 2.8167(14) A, respectively. Fenske-Hall molecular orbital calculations on 1 and 2 have been performed to explain the metal-metal bonding in these unusual mixed-metal polynuclear metal complexes.     

High-nuclearity iridium carbonyl clusters containing phenylgermyl ligands: synthesis, structures, and reactivity

The reaction of Ir4(CO)12 with Ph3GeH at 97 degrees C has yielded the new tetrairidium cluster complexes Ir4(CO)7(GePh3)(mu-GePh2)2[mu3-eta3-GePh(C6H4)](mu-H)2 (10) and Ir4(CO)8(GePh3)2(mu-GePh2)4 (11). The structure of 10 consists of a tetrahedral Ir4 cluster with seven terminal CO groups, two bridging GePh2) ligands, an ortho-metallated bridging mu3-eta3-GePh(C6H4) group, a terminal GePh3 ligand, and two bridging hydrido ligands. Compound 11 consists of a planar butterfly arrangement of four iridium atoms with four bridging GePh2 and two terminal GePh3 ligands. The same reaction at 125 degrees C yielded the two new triiridium clusters Ir3(CO)5(GePh3)(mu-GePh2)3(mu3-GePh)(mu-H) (12) and Ir3(CO)6(GePh3)3(mu-GePh2)3 (13). Compound 12 contains a triangular Ir3 cluster with three bridging GePh2), one triply bridging GePh, and one terminal GePh3 ligand. The compound also contains a hydrido ligand that bridges one of the Ir-Ge bonds. Compound 13 contains a triangular Ir3 cluster with three bridging GePh2 and three terminal GePh3 ligands. At 151 degrees C, an additional complex, Ir4H4(CO)4(mu-GePh2)4(mu4-GePh)2 (14), was isolated. Compound 14 consists of an Ir4 square with four bridging GePh2, two quadruply bridging GePh groups, and four terminal hydrido ligands. Compound 12 reacts with CO at 125 degrees C to give the compound Ir3(CO)6(mu-GePh2)3(mu3-GePh) (15). Compound 15 is formed via the loss of the hydrido ligand and the terminal GePh3 ligand and the addition of one carbonyl ligand to 12. All compounds were fully characterized by IR, NMR, single-crystal X-ray diffraction analysis, and elemental analysis.     

The resolution of racemic 2-alkyl-1-aminocyclopropane-1-carboxylic acids

Practical procedures for the resolution of racemic modification of (1$\text{R}$, 2$\text{S}$)-and (1$\text{S}$, 2$\text{R}$)-1-amino-2-ethylcyclopropane-1-carboxylic acid $\text{1a}$,$\text{b}$,(1$\text{R}$, 2$\text{S}$)- and (1$\text{S}$, 2$\text{R}$)-1-amino-2-methylcyclopropane-1-carboxylic acid $\text{2a}$,$\text{b}$, and (1$\text{R}$, 2$\text{R}$)- and (1$\text{S}$, 2$\text{S}$)-1-amino-2-methylcyclopropane-1-carboxylic acid $\text{3a}$,$\text{b}$ are described; the structures as $\text{1a}$,$\text{2a}$, and $\text{3a}$ were confirmed by X-ray-crystallographic methods.     

Study of grasshopper meiosis-associated proteins using two-dimensional polyacrylamide gel electrophoresis

Premeiotic and meiotic whole testes from grasshoppers were compared for the presence of meiosis associated proteins using one- and two-dimensional sodium dodecyl sulphate-polyacrylamide gel electrophoresis. One-dimensional sodium dodecyl sulphate-polyacrylamide gels detected differences between premeiotic and meiotic samples but two-dimensional gels gave more precise results. Isoelectric focusing revealed only one meiosis-associated protein, while nonequilibrium pH gradient electrophoresis detected five more. It is not known whether these proteins relate to the nuclear aspects of meiosis, or associated cellular changes. These proteins have been electrophoretically purified and monoclonal antibodies are being prepared.